Main Conference Day 3
We developed a clinically inspired targeted LNP system for CD8⁺ T cell–directed mRNA delivery. By precisely tuning per-particle ligand density, we achieved efficient CAR mRNA transfection and robust in vivo CAR-T generation, leading to functional B cell depletion at double-digit µg/kg doses. This scalable, non-viral approach represents a promising platform for off-the-shelf immunotherapy, enabling targeted and dose-efficient programming of immune effector cells.
- Hiroshi Yamada, PhD - Head of Drug Delivery Research and Development, Nitto Denko Corporation
The FORCE platform leverages TfR1 biology to enable delivery of oligonucleotide or biologics to muscle and CNS, with potential applicability to a wide range of neuromuscular diseases. FORCE demonstrated high therapeutic potential in preclinical models of myotonic dystrophy type 1 (DM1) and non-human primates. With DYNE-101, the platform achieved clinical proof-of-concept in DM1 patients, with correction of the underlying splicing defect, broad functional improvement, and a favorable safety profile to date.
- Stefano Zanotti, PhD - VP, Head of Neuromuscular Research, Dyne Therapeutics
The FDA Prescription Drug User Fee Act (PDUFA) Act VII Commitment Letter required FDA to implement a Chemistry, Manufacturing, and Controls (CMC) Development and Readiness Pilot (CDRP) where products regulated by the Center for Biologics Evaluation and Research (CBER) as well as the Center for Drug Evaluation and Research (CDER) may receive expedited and accelerated development. This aims to provide patients with earlier access to anticipated clinical benefit. Patient access to treatments with accelerated designations should not be delayed by CMC challenges. The presentation will explore challenges to expedited CMC development and strategies for improvement.
- David Lin, PhD - President and Principal Consultant, TS Pharma Experts LLC
Oligonucleotides are now clinically validated medicines, but their use and efficacy in kidney has been restricted. We are targeting the proximal tubule cells using conjugated siRNA that have a ligand for the endocytic receptor megalin.
- Alfica Sehgal, PhD - Chief Scientific Officer, Judo Bio
- Chikdu Shivalila, PhD - Senior Scientist, Biology, Wave Life Sciences
siRNA delivery platforms capable of accessing both central and peripheral tissues are critically needed to expand the therapeutic potential of oligonucleotides. Here, we target IGF1R receptor for siRNA delivery across both central and peripheral tissues, offering a complementary strategy for expanding the therapeutic landscape of oligonucleotide delivery.
- Hien Zhao, PhD - Vice President, Neuroscience Research, Ionis Pharmaceuticals
- El Djouhar Rekaï, PhD - Head of Peptide Process Development & Manufacturing, PolyPeptide Group
Preclinical development and IND milestones are often measured by speed to market, supported by toxicology evaluation, first-in-human studies, and seamless scalability. As a global leader in peptide CDMO services, PolyPeptide combines speed, flexibility, deep process knowledge, and strong process economy and control. We leverage advanced process intensification technologies such as flow chemistry, automation, PAT, and high-capacity resins to deliver sufficient API rapidly and reliably. This presentation will share results achieved with these enablers and explain why partnering with PolyPeptide is a game changer for tox and early-phase peptide manufacturing.
- Fabien Rousset, PhD - Global Director of Innovation, Polypeptide Group
Discover how Cyclover amine tag-assisted liquid-phase peptide synthesis (LPPS) achieves higher yields, greener purity and lower carbon footprint compared to solid-phase peptide synthesis (SPPS). By using greener solvents, reducing reagent consumption, and shortening production cycles, this method helps pharmaceutical companies meet sustainability goals and accelerate delivery of consistently high-quality therapeutic peptides to patients.
- Anubrato Aich - Senior Project Manager, AmbioPharm
This presentation highlights advanced downstream technologies in peptide API manufacturing, including continuous chromatography, mixer-type lyophilization, and other emerging innovations. Collectively, these approaches improve efficiency, scalability, and product quality, thereby contributing to next-generation strategies for middle-molecule production.
- Yuta Hiroyama - Senior Scientist, Process Chemistry Group, R&D Department, PeptiStar
To date, no approved siRNA drugs are capable of selectively silencing mutated genes without affecting wild-type alleles. To overcome this limitation, we have developed next-generation SNPD-siRNAs (Single-Nucleotide Polymorphism Distinguishable siRNAs) that achieve allele-specific silencing at single-nucleotide resolution. By precisely distinguishing mutated alleles from normal, these siRNAs offer a powerful therapeutic strategy for hereditary disorders and cancer-associated mutations, representing a major advance toward truly personalized nucleic acid therapeutics with unprecedented precision.
- Kumiko Ui-Tei, PhD - CTO, ANRis Therapeutics and Director/Professor NucleoTIDE & PepTIDE Drug Discovery Center, Institute of Science Tokyo
This presentation will highlight recent progress in the discovery and development of Antibody Oligonucleotide Conjugates. Insights into muscle and cardiac tissue delivery, platform optimization and the preclinical translational of the AOC platform across rare neuromuscular diseases will be discussed.
- Husam Younis, PhD - Senior Vice President, Development Science, Avidity Biosciences
Antibody–oligonucleotide conjugates (AOCs) are an emerging class of therapeutics that combine the cell-targeting specificity of antibodies with the gene-silencing capability of oligonucleotides. While highly promising, the hybrid nature of AOCs presents unique analytical challenges in characterization, metabolite profiling, and bioanalysis. In this study, we present an integrated liquid chromatography–high-resolution mass spectrometry (LC-HRMS) workflow designed to support AOC development from early discovery through in vivo evaluation. We utilize LC-HRMS to rapidly confirm oligonucleotide sequence, molecular integrity, and drug-to-antibody ratio, enabling efficient batch release and structural verification. For metabolite profiling, ion-pairing reversed-phase LC-MS (IPRP-LC-MS) is employed to identify and semi-quantitatively assess oligonucleotide metabolites in tissue samples, providing insights into tissue-specific distribution and lysosomal degradation. Additionally, leveraging a Proteinase K digestion sample preparation approach, we demonstrate the application of IPRP-LC-MS for the quantitative analysis of intact AOCs in plasma, supporting sensitive and selective pharmacokinetic assessments. Together, these LC-HRMS–based assays form a robust and scalable platform that addresses the analytical needs of AOC programs across CMC, nonclinical, and bioanalytical functions. This work highlights key strategies to accelerate AOC development and ensure regulatory readiness.
- Xin Zhang, PhD - Principal Scientist, Denali Therapeutics
- El Djouhar Rekaï, PhD - Head of Peptide Process Development & Manufacturing, PolyPeptide Group
Mid-sized drugs require unique synthetic solutions from early research stages. We report scalable unnatural amino acid synthesis methods featuring two developments: reductive SP2-SP3 bond formation with natural amino acid decarboxylation and enzymatic routes for unique side chains, enhancing medicinal chemistry capabilities for challenging targets.
- Manabu Wadamoto, PhD - Chief Scientist, Chugai Pharmaceutical Co., Ltd.
- Hideki Tomioka, PhD - Director of the Board and CSO, FunPep Co., Ltd.
Disulfide constrained peptides (DCPs) have gained increased attention as a drug modality due to their exceptional stability and combined advantages of large biologics and small molecules. Chemical synthesis, although widely used to produce DCPs, is associated with high cost both economically and environmentally. To reduce the dependence on solid phase peptide synthesis and the negative environmental footprint associated with it, we present a highly versatile, cost and environmentally friendly bioproduction platform to generate DCPs and their conjugates, as well as chemically modified or isotope labeled DCPs. Using the DCP against the E3 ubiquitin ligase ZNRF3, MK1-3.6.10, as a model peptide, we have demonstrated the use of bacterial expression, combined with Ser ligation, to produce multivalent MK1-3.6.10 and MK1-3.6.10 with N-terminal functional groups. We have also developed a bioproduction method for site-specific incorporation of unnatural amino acids into recombinant DCPs by the amber codon suppression system. Lastly, we produced 15N/13C-labeled MK1-3.6.10 with high yield and assessed the performance of a semi-automated resonance assignment workflow that could be used to accelerate binding studies and structural characterization of DCPs. This study provides a proof of concept to generate functionalized DCPs using bioproduction, providing a potential solution to alleviate the reliance on hazardous chemicals, reduce the cost and expedite the timeline for DCP discovery.
- Sunhee Hwang, PhD - Scientist 4, Genentech
VP-001 is a peptide phosphorodiamidate Morpholino oligomer (PMO) conjugate in clinical development for the treatment of retinitis pigmentosa RP-11. Due to the chemical complexity of the compound, a highly basic naturally derived peptide conjugated to a neutral PMO of 25 bases and a size of > 10 kDa, analytical method development has been challenging. UV methodologies can provide good resolution but are not mass spectrometry (MS) compatible, while MS compatible methods suffer from poor resolution. The analytical method development journey has covered many techniques including ion-exchange, reverse-phase and hydrophilic interaction chromatography in conjugation with multiple ion-pair reagents and mixed mode column chemistries. This presentation covers the analytical method development from early-stage research grade material to clinical grade compound.
- Mark Anastasas - Group Lead Chemistry-QC, PYC Therapeutics
Delivering oligonucleotides using protein-based conjugates represents a promising advancement in both oligonucleotide and protein therapeutics. However, these conjugates present significant challenges in synthesis, analytical characterization, and scale-up due to their inherent structural and chemical complexity. This presentation outlines chemistry-driven strategies to address these challenges. We highlight how a focus on conjugate properties and reaction chemistry enabled the elimination of multiple unit operations and chromatography steps, facilitating rapid scale-up to GLP-grade material. We also demonstrate how advanced analytical techniques, particularly mass spectrometry, can differentiate activity based on the site of conjugation. Additionally, we show how rational linker design impacts critical properties such as oligo-to-protein ratios. Our study highlights the importance of integrating chemistry, bioconjugation, and advanced analytical capabilities to support optimization and scale-up of complex oligonucleotide-protein conjugates.
- Naresh Jain, PhD - CEO, NJ Bio
TNBC accounts for about 10-15% of all breast cancers and differs from other types of invasive breast cancer in that they grow and spread faster, have limited treatment options, and a worse prognosis. Therefore, TNBC has a very low survival rate when it metastasizes to the lungs after surgery. We have recently developed a novel Aptamer-Drug Conjugate(ApDC) implantable anticancer agent that shows remarkable survival rate by preventing recurrence and metastasis after surgery in TNBC orthotopic mouse model. This ApDC device is thought to be a new surgical strategy to prevent metastasis in treating TNBC. In this study, we conjugated various types of drugs to aptamers and carried-out its preparation, structural analysis, in-vivo drug release, and chemistry, manufacturing, and control (CMC) of the resulting ApDC. The CMC of the novel ApDC involve precise synthesis and purification to ensure batch consistency, therapeutic efficacy and patient safety. Structural analysis of ApDC by NMR, CD, and UV spectroscopy revealed that it predominantly forms a highly stable and unique secondary structure. These findings provide important structural insight for its biological function and application as potential treatment for TNBC. We will present valuable insights into the development and characterization of aptamer-based drug delivery systems, highlighting their potential for cancer targeted therapy applications.
- Jung Hwan Lee, PhD - CEO, Interoligo Corp.